Variant report

Variant	rs12682808
Chromosome Location	chr9:15548554-15548555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15548082..15550677-chr9:15551279..15553386,2	MCF-7	breast:
2	chr9:15540944..15543831-chr9:15548082..15550784,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164989	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12684388	1.00[AMR][1000 genomes]
rs12684477	1.00[AMR][1000 genomes]
rs12685082	0.85[ASN][1000 genomes]
rs12685218	1.00[AMR][1000 genomes]
rs12686545	1.00[AMR][1000 genomes]
rs1396705	1.00[AFR][1000 genomes]
rs16933316	0.86[ASN][1000 genomes]
rs16933348	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2277191	0.90[EUR][1000 genomes]
rs276452	0.83[ASN][1000 genomes]
rs4372097	1.00[AMR][1000 genomes]
rs55771541	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56361298	0.85[ASN][1000 genomes]
rs57142629	0.80[ASN][1000 genomes]
rs57191285	0.90[ASN][1000 genomes]
rs57467578	0.85[ASN][1000 genomes]
rs57849124	0.89[ASN][1000 genomes]
rs58915725	0.80[ASN][1000 genomes]
rs59639757	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62571021	0.90[ASN][1000 genomes]
rs62571022	0.85[ASN][1000 genomes]
rs62571023	0.85[ASN][1000 genomes]
rs62571024	0.85[ASN][1000 genomes]
rs73408328	0.85[ASN][1000 genomes]
rs73408340	0.89[ASN][1000 genomes]
rs73410253	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73410254	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73644655	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73644657	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7846818	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15544000-15551800	Weak transcription	A549	lung

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