Variant report

Variant	rs12683523
Chromosome Location	chr9:15869455-15869456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10962193	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs10962194	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs11999303	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs12000772	0.86[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12005062	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs12005485	0.83[ASN][1000 genomes]
rs12005521	0.83[ASN][1000 genomes]
rs12682932	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12684485	0.95[ASN][1000 genomes]
rs12685963	0.83[ASN][1000 genomes]
rs1361607	0.92[ASN][1000 genomes]
rs1578557	0.87[ASN][1000 genomes]
rs1578558	0.86[CHB][hapmap];0.81[CHD][hapmap];0.92[ASN][1000 genomes]
rs1582200	0.92[ASN][1000 genomes]
rs2066291	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs57592105	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59779354	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026090	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7028328	0.95[ASN][1000 genomes]
rs7029375	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7029410	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7032595	0.92[ASW][hapmap];0.81[LWK][hapmap];0.82[MKK][hapmap]
rs7039881	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7040071	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7040549	0.80[ASN][1000 genomes]
rs7040580	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7048479	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs73422714	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73422737	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7388793	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs770192	0.95[ASN][1000 genomes]
rs770194	0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs770198	0.86[CHB][hapmap];0.95[ASN][1000 genomes]
rs770199	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs770200	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs770201	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs770202	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs770204	0.83[ASN][1000 genomes]
rs770205	0.83[ASN][1000 genomes]
rs7852250	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs7856304	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7856877	0.85[ASN][1000 genomes]
rs7860354	0.92[ASN][1000 genomes]
rs7861533	0.86[ASN][1000 genomes]
rs7866699	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs7867018	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7867521	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7869609	0.86[CHB][hapmap]
rs9407664	0.92[ASN][1000 genomes]
rs9407665	0.89[ASN][1000 genomes]
rs9407668	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016226	chr9:15841107-15875321	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1015435	chr9:15841107-15880385	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1032081	chr9:15845902-15878115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1027790	chr9:15845902-15878841	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15849000-15873800	Weak transcription	Fetal Lung	lung
2	chr9:15857800-15885400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15863600-15878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15867000-15874400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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