Variant report

Variant	rs1268916
Chromosome Location	chr10:116929522-116929523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1010610	0.94[EUR][1000 genomes]
rs10736240	0.83[EUR][1000 genomes]
rs10787554	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10787555	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10787557	0.85[EUR][1000 genomes]
rs10885651	0.83[EUR][1000 genomes]
rs10885655	0.82[EUR][1000 genomes]
rs10885658	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10885659	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885660	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885661	0.85[EUR][1000 genomes]
rs10885662	0.84[EUR][1000 genomes]
rs10885664	0.84[EUR][1000 genomes]
rs10885669	0.81[EUR][1000 genomes]
rs10885671	0.88[ASN][1000 genomes]
rs10885673	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885675	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10885687	0.80[EUR][1000 genomes]
rs11197081	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197084	0.88[EUR][1000 genomes]
rs11197087	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11197091	0.84[EUR][1000 genomes]
rs11197093	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197094	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197103	0.81[EUR][1000 genomes]
rs11197107	0.84[EUR][1000 genomes]
rs11197110	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11197122	0.88[ASN][1000 genomes]
rs11197126	0.82[EUR][1000 genomes]
rs11197127	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12218100	0.83[ASN][1000 genomes]
rs12355617	0.83[EUR][1000 genomes]
rs12360503	0.88[EUR][1000 genomes]
rs12573443	0.80[EUR][1000 genomes]
rs1264748	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1264756	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1264763	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1264765	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264768	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1264782	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1264783	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1264794	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264795	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264796	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264799	0.94[EUR][1000 genomes]
rs1264802	0.84[EUR][1000 genomes]
rs1268459	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1268460	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1269602	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1270442	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1270654	0.94[EUR][1000 genomes]
rs1537685	0.84[EUR][1000 genomes]
rs1663157	0.89[EUR][1000 genomes]
rs17092908	0.83[ASN][1000 genomes]
rs1899718	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899721	0.84[EUR][1000 genomes]
rs2152148	0.83[EUR][1000 genomes]
rs2265930	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2440313	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2492980	0.86[EUR][1000 genomes]
rs2492981	0.91[EUR][1000 genomes]
rs35120367	0.83[EUR][1000 genomes]
rs35728982	0.83[EUR][1000 genomes]
rs4752724	0.81[EUR][1000 genomes]
rs7474585	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1268916	ATRNL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116923800-116935600	Weak transcription	Fetal Brain Male	brain
2	chr10:116924400-116936000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:116926600-116933400	Weak transcription	Fetal Brain Female	brain
4	chr10:116926600-116951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:116927200-116930200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:116927600-116930000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links