Variant report

Variant	rs12690302
Chromosome Location	chrX:31234101-31234102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv521510	chrX:31231672-31255002	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31142000-31236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chrX:31214200-31240600	Weak transcription	Brain Angular Gyrus	brain
3	chrX:31215200-31250400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chrX:31216000-31248200	Weak transcription	Psoas Muscle	Psoas
5	chrX:31216600-31235400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chrX:31218400-31238200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chrX:31218400-31250200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chrX:31219000-31239000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chrX:31219200-31250200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chrX:31219800-31240800	Weak transcription	Brain Hippocampus Middle	brain
11	chrX:31220000-31241800	Weak transcription	Pancreas	Pancrea
12	chrX:31220400-31234600	Weak transcription	Left Ventricle	heart
13	chrX:31220400-31234800	Weak transcription	Fetal Intestine Small	intestine
14	chrX:31221200-31240800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chrX:31227800-31238400	Weak transcription	HepG2	liver
16	chrX:31227800-31239000	Weak transcription	Osteobl	bone
17	chrX:31228000-31253800	Weak transcription	Liver	Liver
18	chrX:31230000-31234800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chrX:31231600-31237200	Weak transcription	Fetal Muscle Leg	muscle
20	chrX:31231800-31235000	Weak transcription	Brain Substantia Nigra	brain
21	chrX:31231800-31235400	Weak transcription	HUVEC	blood vessel
22	chrX:31231800-31237000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chrX:31231800-31237200	Weak transcription	Right Ventricle	heart
24	chrX:31231800-31237400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chrX:31232000-31235000	Weak transcription	GM12878-XiMat	blood
26	chrX:31232200-31234800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chrX:31232200-31235000	Weak transcription	HMEC	breast
28	chrX:31232800-31234600	Weak transcription	Fetal Heart	heart
29	chrX:31232800-31238600	Weak transcription	HSMMtube	muscle
30	chrX:31233600-31239000	Genic enhancers	Hela-S3	cervix
31	chrX:31233800-31235000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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