Variant report

Variant	rs12691188
Chromosome Location	chr2:21226252-21226253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:21224100-21267126	HepG2	liver:	n/a	n/a
2	MBD4	chr2:21224104-21238956	HepG2	liver:	n/a	n/a
3	HEY1	chr2:21224107-21233145	HepG2	liver:	n/a	n/a
4	FOXA1	chr2:21225430-21226263	HepG2	liver:	n/a	n/a
5	MBD4	chr2:21224090-21233169	HepG2	liver:	n/a	n/a
6	TEAD4	chr2:21224059-21239057	HepG2	liver:	n/a	n/a
7	MYBL2	chr2:21226175-21234085	HepG2	liver:	n/a	n/a
8	POLR2A	chr2:21224116-21239694	HepG2	liver:	n/a	n/a
9	POLR2A	chr2:21224019-21267588	HepG2	liver:	n/a	n/a
10	POLR2A	chr2:21224065-21268658	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21225940..21227900-chr2:21228380..21229986,2	K562	blood:
2	chr2:21224463..21227068-chr2:21229153..21232894,3	K562	blood:
3	chr2:21225502..21228297-chr2:21234763..21236459,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10495715	0.81[AMR][1000 genomes]
rs12720817	0.85[EUR][1000 genomes]
rs12720818	0.85[EUR][1000 genomes]
rs1801702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4665645	0.81[AMR][1000 genomes]
rs497166	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55907101	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57133697	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6413458	0.85[EUR][1000 genomes]
rs72654432	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21222800-21234600	Weak transcription	Adipose Nuclei	Adipose
2	chr2:21223200-21245600	Strong transcription	Liver	Liver
3	chr2:21224200-21227200	Strong transcription	HepG2	liver
4	chr2:21224400-21229000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:21225600-21236400	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr2:21226000-21227000	Weak transcription	Left Ventricle	heart
7	chr2:21226000-21227400	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr2:21226200-21227400	Strong transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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