Variant report

Variant	rs12696185
Chromosome Location	chr3:162950711-162950712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1099111	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11922496	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12330705	0.94[ASN][1000 genomes]
rs13062639	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs13097956	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs1388721	1.00[ASN][1000 genomes]
rs1813205	0.87[ASN][1000 genomes]
rs2035871	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2291554	1.00[ASN][1000 genomes]
rs3843871	1.00[ASN][1000 genomes]
rs3845224	1.00[ASN][1000 genomes]
rs3860533	1.00[ASN][1000 genomes]
rs4022286	1.00[ASN][1000 genomes]
rs4323011	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs6419711	0.81[CEU][hapmap]
rs7624574	0.94[ASN][1000 genomes]
rs7629602	1.00[ASN][1000 genomes]
rs919164	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9818487	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs9840829	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs9853364	1.00[ASN][1000 genomes]
rs9872265	0.82[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1006015	chr3:162626560-163159978	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877791	chr3:162682825-163267267	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1012835	chr3:162695903-163091909	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877796	chr3:162839973-162975100	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv877797	chr3:162849335-162954568	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv592410	chr3:162857478-162976133	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv877799	chr3:162862113-163142162	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv428747	chr3:162883968-163033938	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv877801	chr3:162887073-162975100	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1006269	chr3:162930989-163324002	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv967190	chr3:162932772-162983278	Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv963286	chr3:162941559-162967897	Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162947400-162954200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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