Variant report

Variant	rs12703746
Chromosome Location	chr7:145600035-145600036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12703745	0.96[ASN][1000 genomes]
rs12703747	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12703749	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12703752	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13233813	0.83[ASN][1000 genomes]
rs34036926	0.83[ASN][1000 genomes]
rs34797950	1.00[ASN][1000 genomes]
rs34916433	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34965344	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35159841	0.83[ASN][1000 genomes]
rs35724228	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35957124	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4355696	1.00[ASN][1000 genomes]
rs4370447	0.89[ASN][1000 genomes]
rs4726773	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4726774	0.82[ASN][1000 genomes]
rs62503364	1.00[ASN][1000 genomes]
rs62503366	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62503369	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145598000-145614000	Weak transcription	K562	blood
2	chr7:145599200-145600400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:145599400-145600400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:145599800-145600400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:145600000-145600400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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