Variant report

Variant	rs12705208
Chromosome Location	chr7:104021028-104021029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10228106	0.83[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap]
rs10249235	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs10251097	0.81[MEX][hapmap]
rs10254627	0.81[ASN][1000 genomes]
rs10487203	0.81[ASN][1000 genomes]
rs10953428	0.83[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs10953432	0.83[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs1468143	0.80[GIH][hapmap]
rs1468144	0.83[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap]
rs17390895	0.92[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1989823	0.88[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs2040584	0.83[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs2097667	0.85[GIH][hapmap]
rs2188482	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2188494	0.83[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs2214086	0.83[CHB][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs4236567	0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs4727596	0.85[CHB][hapmap]
rs4727599	0.88[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap]
rs4730001	0.83[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs4730002	0.83[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes]
rs4730006	0.83[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs4730007	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs6465985	0.83[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap]
rs6951873	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs6952170	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs6959400	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs7778325	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs7798273	0.83[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12705208	PLOD3	cis	parietal	SCAN
rs12705208	SPDYE3	cis	parietal	SCAN
rs12705208	CDHR3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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