Variant report

Variant	rs12705214
Chromosome Location	chr7:104091587-104091588
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10224980	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10262774	0.86[AMR][1000 genomes]
rs10263003	0.86[AMR][1000 genomes]
rs10273121	0.83[GIH][hapmap];0.91[MEX][hapmap]
rs10273435	0.82[MEX][hapmap]
rs11763758	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2385169	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4520098	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs4730010	0.83[GIH][hapmap];0.91[MEX][hapmap]
rs62485084	0.84[AMR][1000 genomes]
rs6977743	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs739508	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12705214	DPY19L2P2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104084600-104092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:104091400-104092000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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