Variant report

Variant	rs12705259
Chromosome Location	chr7:104312213-104312214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10249174	1.00[JPT][hapmap]
rs10255156	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10258840	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10269217	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs1113933	1.00[YRI][hapmap]
rs11975577	1.00[JPT][hapmap]
rs12705234	0.82[CEU][hapmap]
rs12705239	1.00[YRI][hapmap]
rs12705240	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs12705241	1.00[YRI][hapmap]
rs12705242	1.00[YRI][hapmap]
rs12705243	0.86[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12705244	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12705260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13222581	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13236834	1.00[YRI][hapmap]
rs2098415	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4338031	0.80[CEU][hapmap];0.84[MEX][hapmap]
rs4579445	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970927	chr7:104307903-104312412	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12705259	ALKBH4	cis	cerebellum	SCAN
rs12705259	EPO	cis	parietal	SCAN
rs12705259	AGFG2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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