Variant report

Variant	rs12705260
Chromosome Location	chr7:104314783-104314784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10249174	1.00[JPT][hapmap]
rs10255156	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10258840	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10269217	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11975577	1.00[JPT][hapmap]
rs12705234	0.82[CEU][hapmap]
rs12705243	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12705244	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12705259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13222581	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2098415	0.84[EUR][1000 genomes]
rs4338031	0.80[CEU][hapmap]
rs4579445	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4631381	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967437	chr7:104312412-104323208	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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