Variant report

Variant	rs12705285
Chromosome Location	chr7:104505281-104505282
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10216243	0.96[ASN][1000 genomes]
rs10226456	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10226802	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10227564	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10235696	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10236552	0.85[EUR][1000 genomes]
rs10238498	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10243336	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10243529	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10247246	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10250365	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10257360	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10259925	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10262655	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10264318	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10272668	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10273609	0.81[ASN][1000 genomes]
rs10274240	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10280365	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10281485	0.85[EUR][1000 genomes]
rs10953454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953455	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12535201	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12670275	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12705281	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705282	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13233998	0.86[EUR][1000 genomes]
rs1468813	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17777379	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17777439	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2285533	0.85[EUR][1000 genomes]
rs28546781	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28587189	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34083033	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34171467	0.85[EUR][1000 genomes]
rs34439336	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34508498	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35146170	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35324592	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35337480	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35756879	0.85[EUR][1000 genomes]
rs35894637	0.86[ASN][1000 genomes]
rs35988800	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4351347	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6963979	0.86[ASN][1000 genomes]
rs6968540	0.84[ASN][1000 genomes]
rs71562620	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71562621	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71562626	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7781864	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
2	chr7:104504400-104517000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:104504800-104505400	ZNF genes & repeats	Fetal Intestine Large	intestine
4	chr7:104504800-104505400	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr7:104505000-104510800	Weak transcription	Duodenum Mucosa	Duodenum

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