Variant report
| Variant | rs12706426 |
|---|---|
| Chromosome Location | chr7:122271679-122271680 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10256337 | 1.00[CEU][hapmap] |
| rs10265175 | 1.00[CEU][hapmap] |
| rs10268190 | 1.00[CEU][hapmap] |
| rs10268368 | 1.00[CEU][hapmap] |
| rs12706425 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12706427 | 1.00[CEU][hapmap] |
| rs13221540 | 1.00[CEU][hapmap] |
| rs13229788 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13237142 | 1.00[CEU][hapmap] |
| rs13239569 | 1.00[CEU][hapmap] |
| rs13247906 | 1.00[CEU][hapmap] |
| rs34182275 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34264090 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34420222 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34458584 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34731459 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34955892 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35127684 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs35331526 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35604970 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35967022 | 0.87[AMR][1000 genomes] |
| rs4283984 | 1.00[CEU][hapmap] |
| rs71574708 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs71574709 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7779064 | 1.00[CEU][hapmap] |
| rs7789775 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017029 | chr7:121958574-122338623 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv532178 | chr7:122203056-122978846 | Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv532179 | chr7:122249639-122986259 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:122269800-122288000 | Weak transcription | HepG2 | liver |
| 2 | chr7:122270600-122272800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
