Variant report

Variant	rs12706761
Chromosome Location	chr7:126740946-126740947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10954142	0.89[CHB][hapmap]
rs1111183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563304	0.89[CHB][hapmap]
rs11563356	0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs11563358	0.89[CHB][hapmap]
rs11563361	0.89[CHB][hapmap]
rs11563730	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs11563742	0.89[CHB][hapmap]
rs11563744	0.89[CHB][hapmap]
rs11563745	0.89[CHB][hapmap]
rs11563791	0.89[CHB][hapmap]
rs11563792	0.89[CHB][hapmap]
rs11771611	0.89[CHB][hapmap]
rs11971261	0.89[CHB][hapmap]
rs12538500	0.88[CHB][hapmap]
rs12706759	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs12706762	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13223635	0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs13234354	0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs13239456	0.89[CHB][hapmap]
rs13239559	0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13244682	0.87[YRI][hapmap]
rs1361961	1.00[YRI][hapmap]
rs1419442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1419447	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs1468096	0.89[CHB][hapmap]
rs1468097	0.89[CHB][hapmap]
rs1557644	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557645	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862281	0.89[CHB][hapmap]
rs17863206	0.89[CHB][hapmap];0.88[YRI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17869426	0.87[YRI][hapmap]
rs2023640	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs2188187	0.88[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs2299524	0.89[CHB][hapmap]
rs2299531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299532	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299536	0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs4728062	0.89[CHB][hapmap]
rs4728063	0.85[CHB][hapmap]
rs4728065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882894	0.89[CHB][hapmap]
rs886001	1.00[YRI][hapmap]
rs916608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs916610	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs916611	0.89[CHB][hapmap]
rs916612	0.89[CHB][hapmap]
rs929172	0.89[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs950527	0.87[YRI][hapmap]
rs953016	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126735200-126742400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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