Variant report

Variant	rs12708522
Chromosome Location	chr15:76664488-76664489
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76654411..76657574-chr15:76660615..76665795,4	K562	blood:
2	chr15:76628611..76630975-chr15:76663649..76666023,2	MCF-7	breast:
3	chr15:76660891..76663592-chr15:76663710..76667547,3	K562	blood:

Variant related genes	Relation type
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10220790	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1499019	1.00[AMR][1000 genomes]
rs1499020	1.00[AMR][1000 genomes]
rs1533600	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157764	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs157765	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs157767	1.00[AMR][1000 genomes]
rs157770	1.00[AMR][1000 genomes]
rs157771	0.83[AMR][1000 genomes]
rs157772	1.00[AMR][1000 genomes]
rs157773	1.00[AMR][1000 genomes]
rs157774	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157781	1.00[AMR][1000 genomes]
rs157782	1.00[AMR][1000 genomes]
rs157784	1.00[AMR][1000 genomes]
rs157786	0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157792	1.00[AMR][1000 genomes]
rs157793	1.00[AMR][1000 genomes]
rs166905	1.00[AMR][1000 genomes]
rs166932	1.00[AMR][1000 genomes]
rs1810347	1.00[AMR][1000 genomes]
rs1814764	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs185860	1.00[AMR][1000 genomes]
rs1875886	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs1878877	1.00[ASW][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs190782	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2037306	1.00[AMR][1000 genomes]
rs2176622	0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2244050	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2245180	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2247488	0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2250805	0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2404735	1.00[AMR][1000 genomes]
rs2405329	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2405330	1.00[AMR][1000 genomes]
rs2405332	1.00[AMR][1000 genomes]
rs2456030	0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456034	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456035	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2456036	1.00[AMR][1000 genomes]
rs2456037	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456038	1.00[AMR][1000 genomes]
rs2456039	1.00[AMR][1000 genomes]
rs2456043	0.83[AMR][1000 genomes]
rs2456044	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456056	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456058	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456059	0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456064	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456068	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456069	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456077	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2459364	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2460141	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2460143	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2460145	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2460149	1.00[AMR][1000 genomes]
rs2460157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460159	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2468117	1.00[AMR][1000 genomes]
rs2469209	1.00[ASW][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469217	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469218	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469219	1.00[AMR][1000 genomes]
rs2469220	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469223	1.00[AMR][1000 genomes]
rs2469240	1.00[AMR][1000 genomes]
rs2469243	1.00[AMR][1000 genomes]
rs2469536	0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469537	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469540	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469545	0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469546	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469549	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469550	1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469551	1.00[AMR][1000 genomes]
rs2469553	1.00[AMR][1000 genomes]
rs2469571	1.00[AMR][1000 genomes]
rs2469572	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469574	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs2516308	1.00[AMR][1000 genomes]
rs283786	1.00[AMR][1000 genomes]
rs283788	1.00[AMR][1000 genomes]
rs283790	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283792	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs283794	1.00[AMR][1000 genomes]
rs283797	1.00[AMR][1000 genomes]
rs283798	0.83[AMR][1000 genomes]
rs283800	0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284879	1.00[AMR][1000 genomes]
rs284882	1.00[AMR][1000 genomes]
rs284887	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284888	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284889	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284890	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs284894	0.83[AMR][1000 genomes]
rs284900	1.00[AMR][1000 genomes]
rs2938692	1.00[AMR][1000 genomes]
rs2938693	1.00[AMR][1000 genomes]
rs2938694	0.83[AMR][1000 genomes]
rs2938696	1.00[AMR][1000 genomes]
rs2938698	1.00[AMR][1000 genomes]
rs2944379	1.00[AMR][1000 genomes]
rs2944380	1.00[AMR][1000 genomes]
rs2948702	1.00[AMR][1000 genomes]
rs2956872	1.00[AMR][1000 genomes]
rs2957558	1.00[AMR][1000 genomes]
rs2957608	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs415439	1.00[AMR][1000 genomes]
rs426225	0.83[AMR][1000 genomes]
rs4886797	1.00[AMR][1000 genomes]
rs542148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs560598	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs598011	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6495202	1.00[AMR][1000 genomes]
rs654416	1.00[AMR][1000 genomes]
rs7164815	1.00[AMR][1000 genomes]
rs8040818	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs937731	1.00[AMR][1000 genomes]
rs937734	1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510667	chr15:76653359-76708310	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76682600	Weak transcription	Pancreas	Pancrea
2	chr15:76639800-76695400	Weak transcription	Spleen	Spleen
3	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
4	chr15:76640800-76694600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:76641400-76694600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:76641600-76665400	Weak transcription	Placenta	Placenta
7	chr15:76641800-76673400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:76642800-76664600	Weak transcription	Thymus	Thymus
9	chr15:76642800-76693800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:76643800-76672400	Weak transcription	Primary B cells from cord blood	blood
11	chr15:76643800-76695000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:76644600-76664600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:76644800-76664600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr15:76645800-76686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:76646600-76695400	Weak transcription	Ovary	ovary
16	chr15:76646800-76666000	Weak transcription	Fetal Brain Female	brain
17	chr15:76647000-76664600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:76648400-76668400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:76648400-76674400	Weak transcription	Brain Substantia Nigra	brain
20	chr15:76650800-76674000	Weak transcription	Small Intestine	intestine
21	chr15:76652400-76675200	Weak transcription	Brain Germinal Matrix	brain
22	chr15:76653400-76672400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:76657400-76674000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:76659400-76664600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:76659600-76664600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:76660000-76670800	Weak transcription	Fetal Thymus	thymus
27	chr15:76660200-76674400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:76660600-76667000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:76660600-76668400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:76660600-76668600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:76660600-76674000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:76660800-76664800	Weak transcription	Fetal Heart	heart
33	chr15:76660800-76665000	Weak transcription	A549	lung
34	chr15:76660800-76669200	Weak transcription	Stomach Mucosa	stomach
35	chr15:76660800-76693600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:76661000-76664600	Weak transcription	Aorta	Aorta
37	chr15:76661000-76664600	Weak transcription	Liver	Liver
38	chr15:76661000-76664600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:76661000-76667600	Weak transcription	HSMM	muscle
40	chr15:76661000-76668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:76661000-76668600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:76661000-76669200	Weak transcription	Fetal Lung	lung
43	chr15:76661000-76670200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:76661000-76670200	Weak transcription	Esophagus	oesophagus
45	chr15:76661000-76674200	Weak transcription	Lung	lung
46	chr15:76661000-76675600	Weak transcription	Colon Smooth Muscle	Colon
47	chr15:76661000-76676400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr15:76661000-76685800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:76661000-76695200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr15:76661000-76695400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links