Variant report

Variant	rs12712529
Chromosome Location	chr2:37475114-37475115
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37467678..37472068-chr2:37474904..37477443,5	K562	blood:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10198835	0.88[YRI][hapmap]
rs10206380	0.96[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs11689186	0.90[LWK][hapmap];0.94[YRI][hapmap]
rs11897101	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2251879	0.87[EUR][1000 genomes]
rs3819892	0.88[YRI][hapmap]
rs4670679	0.84[EUR][1000 genomes]
rs9318	0.92[YRI][hapmap];0.81[AFR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs12712529	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs12712529	QPCT	cis	parietal	SCAN
rs12712529	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs12712529	QPCT	cis	multi-tissue	Pritchard
rs12712529	ATL2	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
2	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
4	chr2:37460400-37476600	Weak transcription	Right Ventricle	heart
5	chr2:37460400-37481600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:37460400-37492200	Weak transcription	Fetal Heart	heart
7	chr2:37460400-37498600	Weak transcription	Gastric	stomach
8	chr2:37460600-37488000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:37460600-37493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:37460600-37498600	Weak transcription	Spleen	Spleen
11	chr2:37461000-37488200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:37461000-37489800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:37461800-37486800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr2:37462000-37487200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:37462000-37488000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:37462400-37479200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:37463200-37477000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:37463200-37481000	Strong transcription	A549	lung
20	chr2:37463200-37487200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:37463200-37487600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:37463200-37488000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr2:37463400-37488400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:37463400-37509600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:37463600-37489600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr2:37463800-37484800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr2:37463800-37488200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:37464000-37488400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr2:37464400-37475800	Strong transcription	Hela-S3	cervix
30	chr2:37464400-37487000	Strong transcription	HSMM	muscle
31	chr2:37464400-37489600	Strong transcription	Liver	Liver
32	chr2:37464600-37476800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:37464800-37486600	Strong transcription	Fetal Intestine Large	intestine
34	chr2:37465000-37489600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr2:37465200-37476200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:37466000-37487600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:37466800-37476800	Weak transcription	Colon Smooth Muscle	Colon
38	chr2:37467200-37487000	Strong transcription	HepG2	liver
39	chr2:37467600-37475800	Weak transcription	Esophagus	oesophagus
40	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
41	chr2:37468200-37477000	Strong transcription	Primary B cells from cord blood	blood
42	chr2:37468200-37477200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr2:37468200-37486400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr2:37468200-37487600	Strong transcription	Adipose Nuclei	Adipose
45	chr2:37468200-37487800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:37468200-37488200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr2:37468400-37475800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr2:37468400-37477600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:37468400-37477600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:37468400-37486800	Strong transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links