Variant report

Variant	rs12724638
Chromosome Location	chr1:92666275-92666276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11164226	0.89[ASN][1000 genomes]
rs11164312	0.89[ASN][1000 genomes]
rs11577572	0.93[CEU][hapmap]
rs11577839	0.89[ASN][1000 genomes]
rs11578012	0.89[ASN][1000 genomes]
rs11578400	0.89[ASN][1000 genomes]
rs11585255	0.89[ASN][1000 genomes]
rs11588044	0.93[CEU][hapmap];0.89[ASN][1000 genomes]
rs11588153	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs11589858	0.93[CEU][hapmap];0.89[ASN][1000 genomes]
rs12094293	0.89[ASN][1000 genomes]
rs1226176	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1226183	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12401372	0.89[ASN][1000 genomes]
rs12404806	0.82[CEU][hapmap]
rs12406749	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12407622	0.89[ASN][1000 genomes]
rs12727665	0.89[ASN][1000 genomes]
rs12729867	1.00[CEU][hapmap]
rs12731923	0.89[ASN][1000 genomes]
rs12734478	1.00[CEU][hapmap]
rs12735898	0.89[ASN][1000 genomes]
rs12740246	0.82[CEU][hapmap]
rs12753920	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12755781	0.93[CEU][hapmap];0.89[ASN][1000 genomes]
rs12757533	0.82[CEU][hapmap];0.89[ASN][1000 genomes]
rs12759512	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384612	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384613	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483022	0.80[CEU][hapmap]
rs17519385	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17578686	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809606	0.89[ASN][1000 genomes]
rs1872007	0.90[ASN][1000 genomes]
rs2004814	0.89[ASN][1000 genomes]
rs2069051	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181897	0.81[EUR][1000 genomes]
rs2391158	0.89[ASN][1000 genomes]
rs2391162	0.89[ASN][1000 genomes]
rs34090353	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35015161	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35580949	0.89[ASN][1000 genomes]
rs4658294	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4658297	0.82[EUR][1000 genomes]
rs4658298	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs4658299	0.93[CEU][hapmap]
rs492164	0.80[CEU][hapmap]
rs493595	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs4949888	0.93[CEU][hapmap];0.89[ASN][1000 genomes]
rs4970699	0.89[ASN][1000 genomes]
rs4970713	0.89[ASN][1000 genomes]
rs506375	0.80[CEU][hapmap]
rs506377	0.84[ASN][1000 genomes]
rs515280	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs519932	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs527412	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs539288	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs544557	0.81[EUR][1000 genomes]
rs547699	0.81[EUR][1000 genomes]
rs551909	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs553861	0.81[EUR][1000 genomes]
rs556980	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs560389	0.86[CEU][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs563113	0.80[CEU][hapmap]
rs569593	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs570368	0.86[CEU][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs575805	0.80[CEU][hapmap]
rs6604082	0.80[CEU][hapmap]
rs6662379	0.89[ASN][1000 genomes]
rs6663905	0.89[ASN][1000 genomes]
rs72720457	0.89[ASN][1000 genomes]
rs7511656	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511669	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522081	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524120	0.89[ASN][1000 genomes]
rs7537221	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7545076	0.80[CEU][hapmap]
rs7550680	0.89[ASN][1000 genomes]
rs9439911	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92662800-92667200	Weak transcription	Dnd41	blood

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