Variant report

Variant	rs12729067
Chromosome Location	chr1:179410952-179410953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10913755	1.00[ASN][1000 genomes]
rs10913760	1.00[ASN][1000 genomes]
rs10913761	1.00[ASN][1000 genomes]
rs10913762	1.00[ASN][1000 genomes]
rs10913766	1.00[ASN][1000 genomes]
rs10913767	1.00[ASN][1000 genomes]
rs10913768	1.00[ASN][1000 genomes]
rs10913769	1.00[ASN][1000 genomes]
rs10913770	1.00[ASN][1000 genomes]
rs10913771	1.00[ASN][1000 genomes]
rs10913809	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11577579	1.00[ASN][1000 genomes]
rs11578241	1.00[ASN][1000 genomes]
rs11582158	0.86[ASN][1000 genomes]
rs11582255	1.00[ASN][1000 genomes]
rs11582293	1.00[ASN][1000 genomes]
rs11582754	1.00[ASN][1000 genomes]
rs11586744	0.93[ASN][1000 genomes]
rs11802624	1.00[ASN][1000 genomes]
rs11802625	1.00[ASN][1000 genomes]
rs11802637	1.00[ASN][1000 genomes]
rs11807559	0.86[ASN][1000 genomes]
rs12401957	1.00[ASN][1000 genomes]
rs12408443	0.93[ASN][1000 genomes]
rs12409337	0.93[ASN][1000 genomes]
rs12722736	1.00[ASN][1000 genomes]
rs12724496	1.00[ASN][1000 genomes]
rs12724634	1.00[ASN][1000 genomes]
rs12724778	0.80[ASN][1000 genomes]
rs12724901	0.86[ASN][1000 genomes]
rs12725414	0.86[ASN][1000 genomes]
rs12726875	0.86[ASN][1000 genomes]
rs12729775	1.00[ASN][1000 genomes]
rs12736279	0.86[ASN][1000 genomes]
rs12736545	0.86[ASN][1000 genomes]
rs12738929	1.00[ASN][1000 genomes]
rs12739116	1.00[ASN][1000 genomes]
rs12741425	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12743585	0.80[ASN][1000 genomes]
rs12744251	1.00[ASN][1000 genomes]
rs12744438	0.86[ASN][1000 genomes]
rs12744949	0.86[ASN][1000 genomes]
rs12746253	0.86[ASN][1000 genomes]
rs12746331	0.82[EUR][1000 genomes]
rs12746578	0.86[ASN][1000 genomes]
rs12750591	1.00[ASN][1000 genomes]
rs12751260	0.86[ASN][1000 genomes]
rs12751550	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12755634	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12755804	0.81[EUR][1000 genomes]
rs12756624	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12757935	0.93[ASN][1000 genomes]
rs12758415	0.93[ASN][1000 genomes]
rs12760048	0.86[ASN][1000 genomes]
rs12760534	0.86[ASN][1000 genomes]
rs1328597	0.86[ASN][1000 genomes]
rs1328598	0.86[ASN][1000 genomes]
rs1410589	0.86[ASN][1000 genomes]
rs1576224	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2209919	0.86[ASN][1000 genomes]
rs34291276	0.86[ASN][1000 genomes]
rs34315375	0.84[EUR][1000 genomes]
rs34463289	0.86[ASN][1000 genomes]
rs35401719	0.86[ASN][1000 genomes]
rs35427395	0.86[ASN][1000 genomes]
rs36057553	0.81[ASN][1000 genomes]
rs4130266	1.00[ASN][1000 genomes]
rs4233177	0.86[ASN][1000 genomes]
rs4233178	0.86[ASN][1000 genomes]
rs4360491	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4418554	0.93[ASN][1000 genomes]
rs4454499	1.00[ASN][1000 genomes]
rs4651028	1.00[ASN][1000 genomes]
rs4651037	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4652368	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61821011	1.00[ASN][1000 genomes]
rs61826364	0.86[ASN][1000 genomes]
rs61826365	0.86[ASN][1000 genomes]
rs7513782	0.93[ASN][1000 genomes]
rs7513973	0.93[ASN][1000 genomes]
rs7532155	1.00[ASN][1000 genomes]
rs7551894	0.93[ASN][1000 genomes]
rs7554103	0.93[ASN][1000 genomes]
rs9662026	0.93[ASN][1000 genomes]
rs9699789	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819329	chr1:179371973-179442337	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv548298	chr1:179376896-179436288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12729067	AXDND1	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179405200-179413000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:179408800-179411400	Enhancers	Fetal Intestine Small	intestine
3	chr1:179409600-179411000	Enhancers	HepG2	liver

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