Variant report
| Variant | rs12729410 |
|---|---|
| Chromosome Location | chr1:71169276-71169277 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71163220..71166214-chr1:71167736..71169797,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10443262 | 0.85[CHB][hapmap];0.90[JPT][hapmap] |
| rs1108801 | 0.81[ASN][1000 genomes] |
| rs12033260 | 0.81[ASN][1000 genomes] |
| rs12046339 | 0.81[ASN][1000 genomes] |
| rs1327460 | 0.93[CHB][hapmap];0.90[JPT][hapmap] |
| rs1343786 | 0.98[ASN][1000 genomes] |
| rs1409985 | 0.93[CHB][hapmap];0.90[JPT][hapmap] |
| rs2225025 | 0.85[CHB][hapmap] |
| rs2421783 | 0.81[ASN][1000 genomes] |
| rs2820547 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs34384777 | 0.81[ASN][1000 genomes] |
| rs4650085 | 0.81[ASN][1000 genomes] |
| rs7530345 | 0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs7533733 | 0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs871577 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv871024 | chr1:71088106-71169865 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
