Variant report

Variant	rs12731316
Chromosome Location	chr1:211091234-211091235
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211085731..211087524-chr1:211090646..211093689,3	K562	blood:
2	chr1:211068269..211070405-chr1:211089672..211092278,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11580400	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501560	0.83[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211087600-211091400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211089600-211091600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:211090000-211093000	Weak transcription	Pancreas	Pancrea
5	chr1:211090000-211094000	Weak transcription	Liver	Liver
6	chr1:211090200-211091400	Weak transcription	HSMM	muscle
7	chr1:211090800-211091600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:211090800-211092000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:211091000-211091600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:211091000-211091600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:211091000-211091600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:211091000-211091600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:211091000-211091600	Enhancers	HSMMtube	muscle
14	chr1:211091000-211091800	Enhancers	Brain Hippocampus Middle	brain
15	chr1:211091000-211092000	Enhancers	Brain Angular Gyrus	brain
16	chr1:211091000-211092000	Enhancers	Brain Anterior Caudate	brain
17	chr1:211091000-211092000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr1:211091200-211091400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr1:211091200-211091600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:211091200-211091800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:211091200-211091800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:211091200-211092000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:211091200-211092000	Enhancers	Brain Substantia Nigra	brain

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