The 2.0 version of rSNPBase

Variant report

Variant rs12731480
Chromosome Location chr1:197529264-197529265
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197478000-197541200 Weak transcription Aorta Aorta
2 chr1:197480000-197535800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr1:197480200-197541200 Weak transcription Esophagus oesophagus
4 chr1:197480200-197541200 Weak transcription Fetal Thymus thymus
5 chr1:197480400-197541200 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:197481400-197529600 Weak transcription Primary hematopoietic stem cells short term culture blood
7 chr1:197487800-197536000 Weak transcription Fetal Lung lung
8 chr1:197496200-197532400 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:197500600-197529400 Weak transcription Primary hematopoietic stem cells blood
10 chr1:197502200-197531800 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:197502400-197534600 Weak transcription Fetal Intestine Large intestine
12 chr1:197503200-197541200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr1:197503600-197535800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr1:197505400-197532400 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr1:197505600-197541000 Weak transcription Pancreas Pancrea
16 chr1:197506400-197535800 Weak transcription Primary B cells from peripheral blood blood
17 chr1:197506600-197537600 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:197506800-197535600 Weak transcription Primary B cells from cord blood blood
19 chr1:197506800-197564600 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr1:197508400-197602400 Weak transcription Left Ventricle heart
21 chr1:197508600-197532200 Weak transcription Primary T cells from cord blood blood
22 chr1:197509000-197529600 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr1:197509200-197529600 Weak transcription Primary T helper cells fromperipheralblood blood
24 chr1:197509200-197535600 Weak transcription Duodenum Mucosa Duodenum
25 chr1:197509200-197535600 Weak transcription Monocytes-CD14+_RO01746 blood
26 chr1:197509400-197536000 Weak transcription Liver Liver
27 chr1:197511400-197535800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:197511800-197535600 Weak transcription Primary T regulatory cells fromperipheralblood blood
29 chr1:197512000-197529400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr1:197512800-197531400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr1:197513800-197535800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr1:197514200-197535800 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr1:197514400-197535800 Weak transcription Primary monocytes fromperipheralblood blood
34 chr1:197522800-197535600 Weak transcription Dnd41 blood
35 chr1:197523000-197532400 Weak transcription Adipose Nuclei Adipose
36 chr1:197525400-197541200 Weak transcription Ovary ovary
37 chr1:197526800-197531800 Weak transcription NHEK skin
38 chr1:197526800-197535000 Weak transcription Muscle Satellite Cultured Cells --
39 chr1:197526800-197535800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:197526800-197563000 Weak transcription Osteobl bone
41 chr1:197527000-197529600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr1:197527000-197531400 Weak transcription NH-A brain
43 chr1:197527000-197535800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:197528200-197531000 Enhancers Fetal Heart heart
45 chr1:197528400-197529600 Enhancers Skeletal Muscle Male skeletal muscle
46 chr1:197528400-197530400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:197528400-197530400 Strong transcription Rectal Mucosa Donor 29 rectum
48 chr1:197529200-197533600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015