Variant report

Variant	rs12733009
Chromosome Location	chr1:225318349-225318350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10915779	0.85[EUR][1000 genomes]
rs1506074	0.81[EUR][1000 genomes]
rs1832540	0.82[EUR][1000 genomes]
rs2501100	0.81[EUR][1000 genomes]
rs2501101	0.81[EUR][1000 genomes]
rs3101904	0.85[EUR][1000 genomes]
rs3101916	0.85[EUR][1000 genomes]
rs3101917	0.85[EUR][1000 genomes]
rs3102115	0.85[EUR][1000 genomes]
rs3105564	0.85[EUR][1000 genomes]
rs3105572	0.85[EUR][1000 genomes]
rs3120989	0.85[EUR][1000 genomes]
rs3120991	0.82[EUR][1000 genomes]
rs3120993	0.85[EUR][1000 genomes]
rs3128654	0.85[EUR][1000 genomes]
rs3128655	0.85[EUR][1000 genomes]
rs3128657	0.83[EUR][1000 genomes]
rs3128664	0.82[EUR][1000 genomes]
rs3128666	0.85[EUR][1000 genomes]
rs3128667	0.85[EUR][1000 genomes]
rs61211002	0.85[EUR][1000 genomes]
rs6683938	0.82[EUR][1000 genomes]
rs6686694	0.81[EUR][1000 genomes]
rs6697382	0.84[EUR][1000 genomes]
rs7521702	0.84[EUR][1000 genomes]
rs7548138	0.85[EUR][1000 genomes]
rs995613	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv524461	chr1:225304331-225347689	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225301800-225355800	Weak transcription	Pancreas	Pancrea

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