Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11485508	0.83[AFR][1000 genomes]
rs11576858	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12027807	0.83[AFR][1000 genomes]
rs12027899	0.84[AFR][1000 genomes]
rs12045492	0.84[AFR][1000 genomes]
rs12045496	0.84[AFR][1000 genomes]
rs12065368	0.84[AFR][1000 genomes]
rs2184954	0.83[AMR][1000 genomes]
rs3120642	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3126054	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3126055	0.81[AMR][1000 genomes]
rs3126056	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3126058	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3126060	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3126062	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34029395	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4567282	0.90[AMR][1000 genomes]
rs66831674	0.81[AMR][1000 genomes]
rs6698994	0.81[AFR][1000 genomes]
rs9435974	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9436062	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3357297	chr1:152266328-152270926	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3323815	chr1:152267528-152272226	Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12733350	HRNR	cis	Nerve Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152264200-152275400	Weak transcription	Ovary	ovary

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