Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10864166	0.83[EUR][1000 genomes]
rs10864169	0.85[EUR][1000 genomes]
rs11120530	0.87[EUR][1000 genomes]
rs11120533	0.85[EUR][1000 genomes]
rs11120539	0.85[EUR][1000 genomes]
rs11120541	0.86[EUR][1000 genomes]
rs11120542	0.86[EUR][1000 genomes]
rs11588455	0.87[EUR][1000 genomes]
rs12026669	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12026702	0.87[EUR][1000 genomes]
rs12037855	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12044688	0.85[EUR][1000 genomes]
rs12047082	0.87[EUR][1000 genomes]
rs12049601	0.85[EUR][1000 genomes]
rs12407482	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12750276	0.86[EUR][1000 genomes]
rs12752882	0.87[EUR][1000 genomes]
rs1339401	0.86[EUR][1000 genomes]
rs1416653	0.83[EUR][1000 genomes]
rs1416654	0.84[EUR][1000 genomes]
rs1416655	0.84[EUR][1000 genomes]
rs1416661	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1538544	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3933352	0.85[EUR][1000 genomes]
rs4098470	0.85[EUR][1000 genomes]
rs4098471	0.85[EUR][1000 genomes]
rs4655397	0.85[EUR][1000 genomes]
rs4655398	0.85[EUR][1000 genomes]
rs4655399	0.85[EUR][1000 genomes]
rs4655400	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6674743	0.81[EUR][1000 genomes]
rs7522160	0.83[EUR][1000 genomes]
rs7531046	0.83[EUR][1000 genomes]
rs946487	0.87[EUR][1000 genomes]
rs946488	0.85[EUR][1000 genomes]
rs946489	0.86[EUR][1000 genomes]
rs946490	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215430000-215434000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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