Variant report

Variant	rs12741518
Chromosome Location	chr1:152193605-152193606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10749668	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10788822	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12724308	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12728261	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12728908	1.00[CHB][hapmap]
rs12728920	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733113	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12733768	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12744920	1.00[AMR][1000 genomes]
rs12756301	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1390489	1.00[JPT][hapmap]
rs16842865	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2496250	1.00[CEU][hapmap]
rs34188717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34403971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34625286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35826906	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41266136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587667	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs71515790	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71515793	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71515794	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71625160	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71625167	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv471347	chr1:152184558-152196669	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv8391	chr1:152185328-152194083	ZNF genes & repeats Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	esv19713	chr1:152185869-152196724	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1800231	chr1:152185890-152196175	ZNF genes & repeats Active TSS Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152191600-152197200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:152192600-152197800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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