Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210621741..210624125-chr1:210624296..210626806,2	MCF-7	breast:
2	chr1:210544820..210547097-chr1:210624472..210626435,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10489381	1.00[ASN][1000 genomes]
rs12121595	1.00[ASN][1000 genomes]
rs12122405	1.00[ASN][1000 genomes]
rs12132714	1.00[ASN][1000 genomes]
rs12723999	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12727682	1.00[ASN][1000 genomes]
rs12728944	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736400	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12741813	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12745578	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749416	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750086	1.00[ASN][1000 genomes]
rs17260445	1.00[ASN][1000 genomes]
rs34167770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288720	1.00[ASN][1000 genomes]
rs35374511	1.00[ASN][1000 genomes]
rs4540660	1.00[ASN][1000 genomes]
rs61826932	1.00[ASN][1000 genomes]
rs61828077	1.00[ASN][1000 genomes]
rs61828094	1.00[ASN][1000 genomes]
rs61828095	1.00[ASN][1000 genomes]
rs6657514	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681264	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691136	1.00[ASN][1000 genomes]
rs6701536	1.00[ASN][1000 genomes]
rs7534803	1.00[ASN][1000 genomes]
rs7550888	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12741858	HHAT	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:210611600-210639600	Weak transcription	Aorta	Aorta
3	chr1:210614600-210641200	Weak transcription	Gastric	stomach
4	chr1:210620200-210637800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:210620400-210626000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:210622000-210630800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:210622400-210631600	Weak transcription	HSMM	muscle
8	chr1:210623400-210626400	Weak transcription	HSMMtube	muscle
9	chr1:210625000-210625800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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