The 2.0 version of rSNPBase

Variant report

Variant rs12743458
Chromosome Location chr1:211482619-211482620
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211434400-211487000 Weak transcription Gastric stomach
2 chr1:211440800-211483600 Strong transcription Primary monocytes fromperipheralblood blood
3 chr1:211443200-211484000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:211444800-211491200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:211445800-211486800 Weak transcription Esophagus oesophagus
6 chr1:211447800-211486200 Weak transcription Stomach Mucosa stomach
7 chr1:211455000-211486800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:211456600-211486000 Weak transcription Small Intestine intestine
9 chr1:211461200-211499600 Weak transcription Psoas Muscle Psoas
10 chr1:211461400-211499600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:211461600-211499600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:211465200-211483200 Weak transcription Right Ventricle heart
13 chr1:211465600-211486800 Weak transcription Pancreas Pancrea
14 chr1:211465800-211486800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:211466200-211485800 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:211466800-211483000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:211466800-211486000 Weak transcription Aorta Aorta
18 chr1:211467000-211483800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:211467000-211486800 Weak transcription Spleen Spleen
20 chr1:211467200-211486600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:211467200-211493800 Weak transcription Fetal Brain Male brain
22 chr1:211467400-211485600 Weak transcription Brain Angular Gyrus brain
23 chr1:211467600-211486000 Weak transcription Placenta Amnion Placenta Amnion
24 chr1:211467800-211486200 Weak transcription Brain Substantia Nigra brain
25 chr1:211467800-211494200 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr1:211468000-211485800 Weak transcription Colon Smooth Muscle Colon
27 chr1:211469400-211485600 Weak transcription H1 Cell Line embryonic stem cell
28 chr1:211470000-211486000 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:211471800-211483000 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr1:211472000-211485600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:211472000-211486600 Weak transcription iPS-15b Cell Line embryonic stem cell
32 chr1:211472000-211487000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr1:211473800-211486000 Weak transcription Lung lung
34 chr1:211473800-211486600 Weak transcription Fetal Intestine Small intestine
35 chr1:211473800-211486600 Weak transcription Fetal Stomach stomach
36 chr1:211474200-211486200 Weak transcription Colonic Mucosa Colon
37 chr1:211474400-211485600 Weak transcription Ovary ovary
38 chr1:211474400-211486000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr1:211474400-211486200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr1:211474800-211486200 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr1:211474800-211497000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
42 chr1:211475800-211483000 Weak transcription Fetal Kidney kidney
43 chr1:211475800-211485600 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr1:211476800-211485600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr1:211477000-211482800 Weak transcription Brain Inferior Temporal Lobe brain
46 chr1:211477000-211483200 Weak transcription Left Ventricle heart
47 chr1:211477000-211485600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr1:211477200-211483000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr1:211477200-211483000 Weak transcription Fetal Muscle Leg muscle
50 chr1:211477200-211483200 Weak transcription NH-A brain

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Last update: Aug 31, 2015