Variant report

Variant	rs12750086
Chromosome Location	chr1:210602250-210602251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10489381	1.00[ASN][1000 genomes]
rs12121595	1.00[ASN][1000 genomes]
rs12122405	1.00[ASN][1000 genomes]
rs12132714	1.00[ASN][1000 genomes]
rs12723999	1.00[ASN][1000 genomes]
rs12727682	1.00[ASN][1000 genomes]
rs12728944	1.00[ASN][1000 genomes]
rs12736400	1.00[ASN][1000 genomes]
rs12741813	1.00[ASN][1000 genomes]
rs12741858	1.00[ASN][1000 genomes]
rs12745578	1.00[ASN][1000 genomes]
rs12749416	1.00[ASN][1000 genomes]
rs17260445	1.00[ASN][1000 genomes]
rs34167770	1.00[ASN][1000 genomes]
rs35288720	1.00[ASN][1000 genomes]
rs35374511	1.00[ASN][1000 genomes]
rs4540660	1.00[ASN][1000 genomes]
rs61826932	1.00[ASN][1000 genomes]
rs61828077	1.00[ASN][1000 genomes]
rs61828094	1.00[ASN][1000 genomes]
rs61828095	1.00[ASN][1000 genomes]
rs6657514	1.00[ASN][1000 genomes]
rs6681264	1.00[ASN][1000 genomes]
rs6691136	1.00[ASN][1000 genomes]
rs6701536	1.00[ASN][1000 genomes]
rs7534803	1.00[ASN][1000 genomes]
rs7550888	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv999294	chr1:210598729-210612528	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:210586400-210610800	Weak transcription	Aorta	Aorta
4	chr1:210592000-210609400	Weak transcription	Ovary	ovary
5	chr1:210592800-210625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:210601000-210607600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:210602000-210602400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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