Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GCLM-5	chr1:94390299-94390941	NONHSAT004561

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489604	0.87[EUR][1000 genomes]
rs11165020	0.83[EUR][1000 genomes]
rs11165024	0.83[EUR][1000 genomes]
rs12027630	0.88[EUR][1000 genomes]
rs12040570	0.81[ASN][1000 genomes]
rs12140446	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12563731	0.86[EUR][1000 genomes]
rs12565614	0.84[EUR][1000 genomes]
rs12566531	0.86[EUR][1000 genomes]
rs12734571	0.88[EUR][1000 genomes]
rs12739186	0.83[EUR][1000 genomes]
rs1884018	0.86[EUR][1000 genomes]
rs2235971	0.88[EUR][1000 genomes]
rs2391322	0.81[EUR][1000 genomes]
rs3747965	0.88[EUR][1000 genomes]
rs4141736	0.88[EUR][1000 genomes]
rs4141737	0.88[EUR][1000 genomes]
rs4847265	0.81[EUR][1000 genomes]
rs6664719	0.87[EUR][1000 genomes]
rs7364910	0.84[EUR][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs12752298	RP11-488P3.1	cis	lung	GTEx
rs12752298	RP11-488P3.1	cis	Adipose Subcutaneous	GTEx
rs12752298	RP11-488P3.1	cis	Muscle Skeletal	GTEx
rs12752298	RP11-488P3.1	cis	Heart Left Ventricle	GTEx
rs12752298	RP11-488P3.1	cis	Stomach	GTEx
rs12752298	RP11-488P3.1	cis	Esophagus Muscularis	GTEx
rs12752298	RP11-488P3.1	cis	Skin Sun Exposed Lower leg	GTEx
rs12752298	RP11-488P3.1	cis	Artery Tibial	GTEx
rs12752298	RP11-488P3.1	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94375600-94421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94390600-94391400	Enhancers	Pancreatic Islets	Pancreatic Islet

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