Variant report

Variant	rs12752670
Chromosome Location	chr1:211530480-211530481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211528873..211531337-chr1:211538922..211541728,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1046690	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs11119713	0.83[EUR][1000 genomes]
rs11577134	0.90[CHB][hapmap]
rs11579228	0.81[ASN][1000 genomes]
rs11580728	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs11803005	0.83[EUR][1000 genomes]
rs12569232	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs12723208	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12729996	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12731366	0.89[CEU][hapmap];0.81[TSI][hapmap]
rs12733930	0.90[CHB][hapmap]
rs12739630	0.90[CHB][hapmap];0.81[CHD][hapmap]
rs12743163	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs12743458	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12754607	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12754747	0.90[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12756590	0.82[EUR][1000 genomes]
rs17188916	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17188937	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17189000	0.82[ASW][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs17267484	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs17267491	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17267554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17267561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2280079	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34027321	0.85[EUR][1000 genomes]
rs34140425	0.86[EUR][1000 genomes]
rs34251608	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34256746	0.87[EUR][1000 genomes]
rs34418448	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs34440485	0.83[EUR][1000 genomes]
rs34813082	0.83[EUR][1000 genomes]
rs35228985	0.83[EUR][1000 genomes]
rs35711226	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35791308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35995968	0.81[EUR][1000 genomes]
rs3738200	0.82[ASW][hapmap];0.81[CHD][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs41275358	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848984	0.83[EUR][1000 genomes]
rs6540681	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs66526219	0.82[EUR][1000 genomes]
rs6679980	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs67764962	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67772854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71640006	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12752670	RCOR3	cis	cerebellum	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211509800-211544200	Weak transcription	HUVEC	blood vessel
2	chr1:211510600-211555400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:211511600-211533000	Weak transcription	Left Ventricle	heart
4	chr1:211514800-211552200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:211515000-211555000	Weak transcription	Hela-S3	cervix
6	chr1:211515000-211555800	Weak transcription	Esophagus	oesophagus
7	chr1:211515200-211543200	Weak transcription	Colonic Mucosa	Colon
8	chr1:211515400-211548400	Weak transcription	Stomach Mucosa	stomach
9	chr1:211519400-211549000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:211519800-211532400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:211519800-211532400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:211519800-211544800	Weak transcription	Fetal Kidney	kidney
13	chr1:211519800-211547400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:211519800-211548600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:211520800-211533800	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:211521200-211550200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:211521600-211555200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:211523600-211542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:211525000-211555600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:211525400-211532400	Weak transcription	A549	lung
21	chr1:211525400-211550200	Weak transcription	NHDF-Ad	bronchial
22	chr1:211525400-211555000	Weak transcription	Fetal Lung	lung
23	chr1:211525600-211548200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:211525600-211550200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr1:211526400-211542200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:211526400-211546400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:211526600-211531400	Strong transcription	Stomach Smooth Muscle	stomach
28	chr1:211526600-211534800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr1:211526600-211555400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:211526800-211550800	Weak transcription	Small Intestine	intestine
31	chr1:211527000-211530600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:211527000-211530600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr1:211527000-211531400	Strong transcription	GM12878-XiMat	blood
34	chr1:211527200-211531000	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr1:211527400-211535400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr1:211527400-211550400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr1:211527600-211532800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr1:211527800-211532400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr1:211527800-211535000	Strong transcription	Primary B cells from cord blood	blood
40	chr1:211528000-211535400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr1:211528000-211551400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr1:211528200-211550600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr1:211528400-211547600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr1:211528600-211531000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr1:211528600-211533000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr1:211528600-211535200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr1:211528800-211530600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr1:211528800-211530600	Strong transcription	Gastric	stomach
49	chr1:211528800-211530800	Strong transcription	Fetal Intestine Large	intestine
50	chr1:211528800-211531200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

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