Variant report

Variant	rs1275672
Chromosome Location	chr14:69855554-69855555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69848093..69849674-chr14:69853487..69856466,2	MCF-7	breast:
2	chr14:69837785..69841681-chr14:69853378..69856330,3	MCF-7	breast:
3	chr14:69854880..69857202-chr14:69857804..69860574,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17836204	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232057	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232058	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296721	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7140358	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145903	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152886	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158020	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7276	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007612	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs8013221	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014284	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015357	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016546	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs8016589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs8021143	0.82[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:69841000-69863400	Strong transcription	A549	lung
4	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:69841600-69858000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:69841600-69863400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:69841800-69857800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr14:69841800-69863000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:69841800-69863800	Weak transcription	Stomach Mucosa	stomach
11	chr14:69842000-69858600	Weak transcription	Fetal Heart	heart
12	chr14:69842200-69857800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:69842600-69863200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:69842800-69857800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:69842800-69862800	Strong transcription	Fetal Thymus	thymus
16	chr14:69843400-69856600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:69843400-69863000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:69843600-69862600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:69843600-69863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:69843800-69856400	Strong transcription	Dnd41	blood
21	chr14:69843800-69859800	Weak transcription	Right Ventricle	heart
22	chr14:69843800-69860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:69843800-69863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:69843800-69863400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:69843800-69863400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:69843800-69863400	Strong transcription	HSMM	muscle
27	chr14:69843800-69863800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:69845800-69857600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr14:69845800-69858600	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:69845800-69859200	Strong transcription	Primary B cells from peripheral blood	blood
31	chr14:69845800-69863000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:69845800-69863400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr14:69846000-69857600	Strong transcription	Liver	Liver
34	chr14:69846000-69862200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:69846000-69863000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr14:69846000-69863000	Strong transcription	HUVEC	blood vessel
37	chr14:69846000-69863000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr14:69846200-69857000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:69846200-69860200	Strong transcription	Primary B cells from cord blood	blood
40	chr14:69846600-69856600	Weak transcription	Esophagus	oesophagus
41	chr14:69848600-69863400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:69848800-69856200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr14:69848800-69856400	Strong transcription	GM12878-XiMat	blood
44	chr14:69849400-69863000	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr14:69849400-69863000	Strong transcription	Placenta	Placenta
46	chr14:69849600-69863000	Strong transcription	HMEC	breast
47	chr14:69850200-69863000	Strong transcription	Osteobl	bone
48	chr14:69850400-69863600	Strong transcription	Fetal Muscle Leg	muscle
49	chr14:69850800-69862000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr14:69851000-69856000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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