Variant report

Variant	rs12759512
Chromosome Location	chr1:92680246-92680247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr1:92680016-92680322	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92674870..92677201-chr1:92679894..92682491,3	MCF-7	breast:

Variant related genes	Relation type
C1orf146	TF binding region

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10874637	0.83[ASN][1000 genomes]
rs11164226	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164312	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11577572	0.83[EUR][1000 genomes]
rs11577839	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11578012	0.89[ASN][1000 genomes]
rs11578400	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11580693	0.85[EUR][1000 genomes]
rs11585255	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11586355	0.81[EUR][1000 genomes]
rs11586989	0.82[EUR][1000 genomes]
rs11588044	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11588153	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11589858	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12094293	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1226176	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1226179	0.81[EUR][1000 genomes]
rs1226183	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12401372	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12404806	0.85[EUR][1000 genomes]
rs12406749	0.86[EUR][1000 genomes]
rs12407622	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12411162	0.83[EUR][1000 genomes]
rs12724638	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12727665	0.89[ASN][1000 genomes]
rs12731923	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12735898	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12740246	0.83[EUR][1000 genomes]
rs12749317	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12753920	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12755781	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12757533	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384612	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384613	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519385	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17578686	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809606	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1872007	0.90[ASN][1000 genomes]
rs2004814	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2069051	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181897	0.83[EUR][1000 genomes]
rs2391158	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391162	0.89[ASN][1000 genomes]
rs34090353	0.89[ASN][1000 genomes]
rs35015161	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35580949	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658294	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4658297	0.87[EUR][1000 genomes]
rs4658298	0.86[EUR][1000 genomes]
rs4658299	0.85[EUR][1000 genomes]
rs492164	0.82[EUR][1000 genomes]
rs4949888	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4970699	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4970713	0.89[ASN][1000 genomes]
rs506375	0.82[EUR][1000 genomes]
rs506377	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs511546	0.82[EUR][1000 genomes]
rs515280	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs519932	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs539288	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs544557	0.83[EUR][1000 genomes]
rs556980	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs560389	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs563113	0.82[EUR][1000 genomes]
rs564971	0.82[EUR][1000 genomes]
rs569593	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs570368	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs573044	0.82[EUR][1000 genomes]
rs575805	0.82[EUR][1000 genomes]
rs58394161	0.83[ASN][1000 genomes]
rs6603973	0.83[ASN][1000 genomes]
rs6603974	0.83[ASN][1000 genomes]
rs6662379	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6663905	0.89[ASN][1000 genomes]
rs66758257	0.85[EUR][1000 genomes]
rs72720457	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7511656	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511669	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522081	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524120	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7537221	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7545076	0.81[EUR][1000 genomes]
rs7550680	0.89[ASN][1000 genomes]
rs9439911	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv830592	chr1:92669282-92805629	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links