Variant report

Variant	rs12760127
Chromosome Location	chr1:172750417-172750418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172739645..172741393-chr1:172748308..172750627,2	K562	blood:
2	chr1:172749058..172751502-chr1:172753005..172755084,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10127707	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10912476	0.93[ASN][1000 genomes]
rs11589360	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11810332	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11810529	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11810687	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12141975	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12749912	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12760147	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1476423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492905	0.81[EUR][1000 genomes]
rs17279900	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17370938	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2022168	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2077690	0.91[CHD][hapmap]
rs2131375	0.91[CHD][hapmap]
rs35319454	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36060149	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56298311	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61810478	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672031	0.93[ASN][1000 genomes]
rs6686744	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6703999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704841	0.91[CHD][hapmap]
rs733684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859625	0.83[EUR][1000 genomes]
rs859723	0.91[CHD][hapmap]
rs859724	0.91[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12760127	SELE	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172748600-172750600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:172749000-172750800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:172750200-172751400	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:172750200-172751400	Flanking Active TSS	GM12878-XiMat	blood

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