Variant report

Variant	rs12768916
Chromosome Location	chr10:52630185-52630186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10821871	0.87[ASW][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.87[YRI][hapmap]
rs10821876	0.95[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs10821877	0.87[ASW][hapmap];0.95[YRI][hapmap]
rs10821887	0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[ASN][1000 genomes]
rs10821888	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs10994720	0.87[ASW][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs11591939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12768968	0.89[YRI][hapmap]
rs12769066	0.81[CHD][hapmap]
rs16910442	0.93[CHD][hapmap];0.80[ASN][1000 genomes]
rs16910492	0.80[ASN][1000 genomes]
rs4935194	0.95[CHB][hapmap];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12768916	CHAT	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52617800-52634200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52619800-52639800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:52622800-52643000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52626800-52632200	Enhancers	Liver	Liver
6	chr10:52628200-52632200	Weak transcription	HepG2	liver
7	chr10:52628200-52634000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:52629600-52642400	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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