Variant report

Variant	rs12768968
Chromosome Location	chr10:52621752-52621753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10821871	0.87[CEU][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821877	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10994720	0.87[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10994731	1.00[CHB][hapmap]
rs10994856	0.83[YRI][hapmap]
rs10994860	0.83[YRI][hapmap]
rs11815391	0.87[CEU][hapmap]
rs12768916	0.89[YRI][hapmap]
rs28621957	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35182775	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4567398	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12768968	ASAH2B	cis	lung	GTEx
rs12768968	ASAH2B	cis	Thyroid	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52598200-52622400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:52617800-52634200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:52619400-52622200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:52619800-52622400	Enhancers	Liver	Liver
6	chr10:52619800-52639800	Weak transcription	Fetal Intestine Large	intestine
7	chr10:52620800-52626200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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