Variant report

Variant	rs12768998
Chromosome Location	chr10:25731527-25731528
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11014558	0.82[YRI][hapmap]
rs11014560	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs12770371	1.00[CEU][hapmap]
rs12777013	1.00[CEU][hapmap]
rs12778817	1.00[CEU][hapmap]
rs12782899	0.93[EUR][1000 genomes]
rs35288024	0.87[EUR][1000 genomes]
rs35548799	0.81[EUR][1000 genomes]
rs71495461	0.81[EUR][1000 genomes]
rs74124007	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761584	chr10:25727933-25732659	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25730400-25731800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:25731200-25731800	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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