Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10399962	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs10741087	0.93[EUR][1000 genomes]
rs10764543	0.88[CEU][hapmap]
rs10828793	0.88[CEU][hapmap]
rs10828807	0.88[CEU][hapmap]
rs11014530	0.88[CEU][hapmap]
rs11014550	0.83[CEU][hapmap]
rs11014553	0.88[CEU][hapmap]
rs11014554	0.88[CEU][hapmap]
rs11014558	0.83[CEU][hapmap];0.92[GIH][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes]
rs11014559	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs11014560	0.93[EUR][1000 genomes]
rs11014561	0.81[EUR][1000 genomes]
rs11014564	1.00[CEU][hapmap]
rs12259043	0.88[CEU][hapmap]
rs12259696	0.88[CEU][hapmap]
rs12356315	0.94[CEU][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap]
rs12358447	0.94[CEU][hapmap]
rs12764415	1.00[CEU][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap]
rs12765005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12773262	0.93[CEU][hapmap]
rs16925850	0.88[CEU][hapmap]
rs16925877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4431923	0.88[CEU][hapmap]
rs4537661	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12770990	GPR158	cis	cerebellum	SCAN
rs12770990	RAB18	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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