Variant report

Variant	rs12782899
Chromosome Location	chr10:25734708-25734709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12768998	0.93[EUR][1000 genomes]
rs35288024	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35548799	0.87[EUR][1000 genomes]
rs71495461	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74124007	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25734600-25734800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:25734600-25734800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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