Variant report

Variant	rs12788635
Chromosome Location	chr11:71058558-71058559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11233147	1.00[CEU][hapmap];0.88[JPT][hapmap];0.80[LWK][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11233174	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12794450	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34247947	0.98[ASN][1000 genomes]
rs3893148	0.85[ASN][1000 genomes]
rs7106184	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7112442	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73536062	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73536063	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73538149	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7358414	0.91[ASN][1000 genomes]
rs7932973	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7938712	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71055600-71060800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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