Variant report

Variant	rs12791740
Chromosome Location	chr11:86436748-86436749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10501629	1.00[CHB][hapmap]
rs10898527	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898528	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs10898535	1.00[CHB][hapmap]
rs11234753	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234760	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234761	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs11234767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs11234768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs11234769	0.83[EUR][1000 genomes]
rs11234778	1.00[CHB][hapmap]
rs11234798	1.00[CHB][hapmap]
rs11234799	1.00[CHB][hapmap]
rs11234806	1.00[CHB][hapmap]
rs11234818	1.00[CHB][hapmap]
rs11602353	1.00[CHB][hapmap]
rs11607392	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11608167	1.00[CHB][hapmap]
rs12360547	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362635	0.83[EUR][1000 genomes]
rs12786875	1.00[CHB][hapmap]
rs12787853	1.00[CHB][hapmap]
rs12793595	1.00[CHB][hapmap]
rs12805405	1.00[CHB][hapmap]
rs17159941	1.00[CHB][hapmap]
rs17758195	1.00[CHB][hapmap]
rs17758206	1.00[CHB][hapmap]
rs17758334	1.00[CHB][hapmap]
rs17758376	1.00[CHB][hapmap]
rs17758400	1.00[CHB][hapmap]
rs17819945	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17820139	1.00[CHB][hapmap]
rs1815753	1.00[CHB][hapmap]
rs2000538	1.00[CHB][hapmap]
rs2105587	1.00[CHB][hapmap]
rs34343472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs6592314	1.00[CHB][hapmap]
rs7105597	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108254	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128682	1.00[CHB][hapmap]
rs7128805	1.00[CHB][hapmap]
rs71465652	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86431800-86438200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:86433000-86437200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86433000-86437200	Weak transcription	NHLF	lung
6	chr11:86433400-86437200	Weak transcription	NH-A	brain
7	chr11:86433600-86436800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:86433800-86437200	Weak transcription	Osteobl	bone
9	chr11:86433800-86437400	Weak transcription	NHDF-Ad	bronchial
10	chr11:86434800-86446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:86435200-86439000	Enhancers	HMEC	breast
12	chr11:86436400-86437200	Weak transcription	A549	lung
13	chr11:86436400-86438800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:86436400-86439000	Enhancers	Hela-S3	cervix
15	chr11:86436600-86437800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:86436600-86438000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:86436600-86438000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:86436600-86438400	Enhancers	NHEK	skin
19	chr11:86436600-86439600	Weak transcription	Stomach Smooth Muscle	stomach

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