Variant report

Variant	rs12792107
Chromosome Location	chr11:18796746-18796747
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12288559	1.00[MEX][hapmap]
rs12801384	1.00[EUR][1000 genomes]
rs34083716	1.00[EUR][1000 genomes]
rs34169037	0.82[EUR][1000 genomes]
rs35599608	1.00[EUR][1000 genomes]
rs36002598	1.00[EUR][1000 genomes]
rs4075663	0.92[YRI][hapmap]
rs6483525	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7102842	1.00[MEX][hapmap]
rs7106180	1.00[MEX][hapmap]
rs71486879	1.00[EUR][1000 genomes]
rs7932701	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932876	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7932996	0.92[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936774	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18783000-18801800	Weak transcription	Spleen	Spleen
2	chr11:18784000-18808000	Weak transcription	Fetal Brain Female	brain
3	chr11:18790800-18811400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:18793600-18809000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:18794600-18811800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:18795200-18801400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:18795400-18801400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:18795400-18804600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:18796000-18800400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:18796000-18800600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:18796000-18802000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:18796400-18812400	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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