Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10832725	0.82[EUR][1000 genomes]
rs10832727	0.87[EUR][1000 genomes]
rs11024113	0.86[EUR][1000 genomes]
rs11024116	0.87[EUR][1000 genomes]
rs11024130	0.91[EUR][1000 genomes]
rs11024131	0.91[EUR][1000 genomes]
rs12288579	0.86[EUR][1000 genomes]
rs12293395	0.84[EUR][1000 genomes]
rs12420958	0.86[ASN][1000 genomes]
rs12575466	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12577388	0.86[ASN][1000 genomes]
rs12577418	0.86[ASN][1000 genomes]
rs17472942	0.88[ASN][1000 genomes]
rs17560341	0.86[ASN][1000 genomes]
rs1987694	0.84[ASN][1000 genomes]
rs4255517	0.85[EUR][1000 genomes]
rs4456241	0.85[EUR][1000 genomes]
rs4468326	0.86[EUR][1000 genomes]
rs4517490	0.85[EUR][1000 genomes]
rs56030184	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61879692	0.86[ASN][1000 genomes]
rs6486345	0.85[EUR][1000 genomes]
rs6486346	0.88[EUR][1000 genomes]
rs6486347	0.88[EUR][1000 genomes]
rs6486348	0.92[EUR][1000 genomes]
rs71047522	0.88[EUR][1000 genomes]
rs7106954	0.92[EUR][1000 genomes]
rs7130826	0.81[EUR][1000 genomes]
rs7924495	0.85[EUR][1000 genomes]
rs7929927	0.85[EUR][1000 genomes]
rs7934571	0.91[EUR][1000 genomes]
rs7934608	0.86[EUR][1000 genomes]
rs7934694	0.86[EUR][1000 genomes]
rs7935162	0.90[EUR][1000 genomes]
rs7935420	0.91[EUR][1000 genomes]
rs7935677	0.86[EUR][1000 genomes]
rs7937880	0.92[EUR][1000 genomes]
rs7949405	0.84[EUR][1000 genomes]
rs7950225	0.88[EUR][1000 genomes]
rs7952426	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17059000-17067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: