Variant report

Variant	rs12794588
Chromosome Location	chr11:93663529-93663530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10466335	0.80[EUR][1000 genomes]
rs10501809	0.80[EUR][1000 genomes]
rs10741479	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10765647	0.80[EUR][1000 genomes]
rs10831148	0.80[EUR][1000 genomes]
rs10831150	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831151	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020593	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020605	0.95[ASN][1000 genomes]
rs11020606	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020607	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020608	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020610	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020616	0.88[ASN][1000 genomes]
rs1105113	0.88[ASN][1000 genomes]
rs1105114	0.86[ASN][1000 genomes]
rs11603095	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12785240	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12786407	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12786631	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12787903	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12789693	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12792942	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12807496	0.88[ASN][1000 genomes]
rs2399748	0.88[ASN][1000 genomes]
rs2895491	0.88[ASN][1000 genomes]
rs34082624	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34451374	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34537425	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34699227	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35579191	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35919303	0.81[EUR][1000 genomes]
rs35945951	0.82[ASN][1000 genomes]
rs4753113	0.80[EUR][1000 genomes]
rs4753522	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753523	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753524	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55756119	0.89[ASN][1000 genomes]
rs60079517	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6483280	0.80[EUR][1000 genomes]
rs6483283	0.80[EUR][1000 genomes]
rs7105031	0.80[EUR][1000 genomes]
rs7105060	0.80[EUR][1000 genomes]
rs7484198	0.92[ASN][1000 genomes]
rs7927632	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7934440	0.88[ASN][1000 genomes]
rs7942055	0.89[ASN][1000 genomes]
rs877341	0.89[ASN][1000 genomes]
rs908746	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs908748	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93656400-93669000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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