Variant report

Variant	rs12796719
Chromosome Location	chr11:35107838-35107839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDHX-3	chr11:35107760-35107870	NONHSAT018772

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11032995	0.92[YRI][hapmap]
rs353594	0.83[EUR][1000 genomes]
rs353599	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs353601	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs353605	0.86[CEU][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv975326	chr11:35103908-35125981	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35103200-35110600	Enhancers	Fetal Muscle Leg	muscle
2	chr11:35103600-35108400	Enhancers	Fetal Muscle Trunk	muscle
3	chr11:35104000-35110400	Enhancers	Psoas Muscle	Psoas
4	chr11:35104400-35108800	Weak transcription	HUVEC	blood vessel
5	chr11:35104600-35110000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:35104800-35109200	Weak transcription	Aorta	Aorta
7	chr11:35104800-35109200	Weak transcription	Spleen	Spleen
8	chr11:35105000-35111000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:35105200-35108000	Enhancers	NHDF-Ad	bronchial
10	chr11:35105200-35109200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:35105200-35109200	Weak transcription	Right Ventricle	heart
12	chr11:35105200-35109800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:35105200-35110000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:35105400-35108000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr11:35105400-35108000	Enhancers	Hela-S3	cervix
16	chr11:35105400-35109000	Weak transcription	Pancreas	Pancrea
17	chr11:35105400-35109200	Weak transcription	Lung	lung
18	chr11:35105400-35109400	Enhancers	Rectal Smooth Muscle	rectum
19	chr11:35105400-35111800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:35105400-35112400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr11:35105400-35112800	Enhancers	Primary T cells from cord blood	blood
22	chr11:35105600-35109000	Weak transcription	Placenta	Placenta
23	chr11:35105600-35109200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:35105600-35109200	Weak transcription	Stomach Mucosa	stomach
25	chr11:35105600-35109400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:35105600-35109800	Weak transcription	Brain Anterior Caudate	brain
27	chr11:35105600-35110800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:35105800-35108200	Enhancers	Stomach Smooth Muscle	stomach
29	chr11:35105800-35109200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:35105800-35112000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:35106000-35109000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:35106000-35109200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:35106000-35109400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr11:35106000-35109600	Weak transcription	Fetal Brain Male	brain
35	chr11:35106000-35110600	Enhancers	Colon Smooth Muscle	Colon
36	chr11:35106200-35108800	Weak transcription	HSMMtube	muscle
37	chr11:35106200-35109000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:35106200-35109000	Weak transcription	Primary B cells from cord blood	blood
39	chr11:35106200-35109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:35106200-35109000	Weak transcription	Thymus	Thymus
41	chr11:35106200-35110000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:35106400-35108600	Weak transcription	Dnd41	blood
43	chr11:35106400-35109000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:35106400-35109000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:35106400-35109000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:35106400-35109000	Weak transcription	Osteobl	bone
47	chr11:35106400-35109400	Weak transcription	Colonic Mucosa	Colon
48	chr11:35106400-35109400	Weak transcription	NH-A	brain
49	chr11:35106600-35108800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:35106600-35108800	Weak transcription	Muscle Satellite Cultured Cells	--

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