Variant report

Variant	rs12807111
Chromosome Location	chr11:46924174-46924175
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46920307..46922992-chr11:46923917..46925477,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1007738	0.87[EUR][1000 genomes]
rs10734549	0.87[EUR][1000 genomes]
rs10742784	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10769208	0.87[EUR][1000 genomes]
rs10769211	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10769212	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10769225	0.86[EUR][1000 genomes]
rs10769226	0.86[EUR][1000 genomes]
rs10769227	0.83[EUR][1000 genomes]
rs10769228	0.81[EUR][1000 genomes]
rs10838620	0.87[EUR][1000 genomes]
rs10838624	0.82[ASN][1000 genomes]
rs10838627	0.88[ASN][1000 genomes]
rs10838628	0.88[ASN][1000 genomes]
rs10838629	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10838635	0.87[EUR][1000 genomes]
rs10838640	0.86[EUR][1000 genomes]
rs10838641	0.83[EUR][1000 genomes]
rs10838646	0.81[EUR][1000 genomes]
rs11039014	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11039017	0.88[ASN][1000 genomes]
rs11039018	0.88[ASN][1000 genomes]
rs11039024	0.99[ASN][1000 genomes]
rs11039028	0.88[EUR][1000 genomes]
rs11039033	0.87[EUR][1000 genomes]
rs11600292	0.88[EUR][1000 genomes]
rs11602250	0.88[EUR][1000 genomes]
rs11606992	0.81[ASN][1000 genomes]
rs11608083	0.88[EUR][1000 genomes]
rs12806577	0.83[EUR][1000 genomes]
rs1551744	0.88[EUR][1000 genomes]
rs2035068	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290883	0.82[ASN][1000 genomes]
rs2290884	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2306026	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2306027	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2306028	0.82[ASN][1000 genomes]
rs2306033	0.81[ASN][1000 genomes]
rs2306035	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2306036	0.92[ASN][1000 genomes]
rs2306037	0.90[ASN][1000 genomes]
rs2867219	0.83[ASN][1000 genomes]
rs2903522	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34340483	0.88[EUR][1000 genomes]
rs3816614	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3829940	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4075619	0.85[EUR][1000 genomes]
rs4294527	0.87[EUR][1000 genomes]
rs4394802	0.83[EUR][1000 genomes]
rs4548577	0.83[EUR][1000 genomes]
rs4581406	0.88[EUR][1000 genomes]
rs4752815	0.87[EUR][1000 genomes]
rs4752816	0.87[EUR][1000 genomes]
rs4752946	0.82[ASN][1000 genomes]
rs4752947	0.82[ASN][1000 genomes]
rs60258676	0.82[ASN][1000 genomes]
rs6485692	0.81[EUR][1000 genomes]
rs6485695	0.87[EUR][1000 genomes]
rs6485715	0.88[EUR][1000 genomes]
rs7101374	0.87[EUR][1000 genomes]
rs7107778	0.87[EUR][1000 genomes]
rs7109707	0.87[EUR][1000 genomes]
rs7111270	0.81[EUR][1000 genomes]
rs7118170	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7119247	0.87[ASN][1000 genomes]
rs7123632	0.83[EUR][1000 genomes]
rs7128193	0.82[EUR][1000 genomes]
rs7130947	0.82[EUR][1000 genomes]
rs7480140	0.87[EUR][1000 genomes]
rs7929688	0.85[EUR][1000 genomes]
rs7934421	0.87[EUR][1000 genomes]
rs7935346	0.82[EUR][1000 genomes]
rs7938169	0.88[EUR][1000 genomes]
rs7939786	0.87[EUR][1000 genomes]
rs7940441	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7941252	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7943866	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7945558	0.88[EUR][1000 genomes]
rs7946739	0.88[EUR][1000 genomes]
rs898604	0.92[ASN][1000 genomes]
rs964551	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
2	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
3	chr11:46917800-46934000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:46917800-46934000	Weak transcription	NHLF	lung
5	chr11:46918200-46924400	Weak transcription	Brain Germinal Matrix	brain
6	chr11:46918200-46925400	Weak transcription	Fetal Brain Male	brain
7	chr11:46918400-46925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:46918600-46924200	Weak transcription	Right Atrium	heart
9	chr11:46918800-46925400	Weak transcription	HSMMtube	muscle
10	chr11:46918800-46928000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:46918800-46934000	Weak transcription	Colonic Mucosa	Colon
12	chr11:46919800-46927800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:46920400-46928400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:46920600-46924400	Weak transcription	Lung	lung
15	chr11:46920600-46925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:46921200-46924400	Weak transcription	Left Ventricle	heart
17	chr11:46921200-46928400	Weak transcription	Fetal Brain Female	brain
18	chr11:46921600-46924400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:46921600-46924600	Weak transcription	Right Ventricle	heart
20	chr11:46921600-46925200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:46921600-46925400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:46921600-46925400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:46921600-46927400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:46921600-46928000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:46921600-46928000	Weak transcription	Ovary	ovary
26	chr11:46921600-46933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:46921600-46933800	Weak transcription	NHEK	skin
28	chr11:46921600-46934000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:46921600-46934200	Weak transcription	Esophagus	oesophagus
30	chr11:46921600-46936000	Weak transcription	Pancreas	Pancrea
31	chr11:46921600-46936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:46921800-46924400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:46921800-46924400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:46921800-46924800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:46921800-46928000	Weak transcription	HepG2	liver
36	chr11:46921800-46934000	Weak transcription	Fetal Intestine Large	intestine
37	chr11:46921800-46938400	Weak transcription	Gastric	stomach
38	chr11:46922000-46924200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:46922000-46924600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:46922000-46924600	Weak transcription	Spleen	Spleen
41	chr11:46922000-46925200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:46922000-46925200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:46922000-46925200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:46922000-46925400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:46922000-46925400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:46922000-46925800	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr11:46922000-46928000	Weak transcription	Placenta	Placenta
48	chr11:46922000-46928200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:46922000-46928400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr11:46922000-46928400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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