Variant report

Variant	rs12809086
Chromosome Location	chr12:51062257-51062258
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51061079..51062937-chr20:57164593..57166154,2	MCF-7	breast:
2	chr12:51062193..51066616-chr12:51069507..51072136,4	K562	blood:

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1003033	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10431486	0.85[EUR][1000 genomes]
rs10431535	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10444547	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10459233	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10459234	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10459235	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10506294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10506295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10747584	0.82[EUR][1000 genomes]
rs10747585	0.85[EUR][1000 genomes]
rs10747587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10783369	0.85[EUR][1000 genomes]
rs10783370	0.85[EUR][1000 genomes]
rs10783371	0.85[EUR][1000 genomes]
rs10783372	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs10783373	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs10783374	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10783378	0.85[EUR][1000 genomes]
rs10783381	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10783382	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10783383	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10783384	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10783389	0.86[CHB][hapmap]
rs10876042	0.82[EUR][1000 genomes]
rs10876043	0.83[EUR][1000 genomes]
rs10876047	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs10876051	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs10876052	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes]
rs10876053	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs10876056	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs10876058	0.85[EUR][1000 genomes]
rs10876060	0.84[EUR][1000 genomes]
rs10876061	0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs10876063	0.85[EUR][1000 genomes]
rs10876065	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10876067	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs10876068	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10876070	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10876071	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10876072	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10876073	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10876075	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10876076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10876081	0.80[AMR][1000 genomes]
rs10876089	0.80[AMR][1000 genomes]
rs10876095	0.83[CHB][hapmap]
rs10876096	0.86[CHB][hapmap]
rs10876097	0.86[CHB][hapmap]
rs11169479	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs11169480	0.85[EUR][1000 genomes]
rs11169481	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs11169483	0.80[EUR][1000 genomes]
rs11169487	0.85[EUR][1000 genomes]
rs11169493	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs11169498	0.83[EUR][1000 genomes]
rs11169505	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11169507	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11169515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169528	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11169532	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169537	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169538	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11169539	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11169544	0.81[CHB][hapmap];0.80[AMR][1000 genomes]
rs11169552	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs11169554	0.80[AMR][1000 genomes]
rs11169560	0.86[CHB][hapmap]
rs11169561	0.90[CHB][hapmap]
rs11613488	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11615933	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12230242	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12231309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12231317	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12424860	0.80[AMR][1000 genomes]
rs12580051	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12580479	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12582712	0.85[EUR][1000 genomes]
rs12827022	0.83[EUR][1000 genomes]
rs1344958	0.86[CHB][hapmap]
rs17124930	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2090851	0.85[EUR][1000 genomes]
rs2243571	0.83[EUR][1000 genomes]
rs2264734	0.81[EUR][1000 genomes]
rs2684908	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs2700478	0.82[EUR][1000 genomes]
rs34867510	0.82[EUR][1000 genomes]
rs35845404	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3742063	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3742064	0.90[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3809319	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs3825402	0.90[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3893353	0.85[EUR][1000 genomes]
rs3935138	0.89[CEU][hapmap]
rs3935869	0.83[EUR][1000 genomes]
rs4131769	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs4238106	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4238107	0.80[AFR][1000 genomes]
rs4238108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307773	0.81[CHB][hapmap]
rs4516034	0.85[EUR][1000 genomes]
rs4768850	0.85[EUR][1000 genomes]
rs4768852	0.84[EUR][1000 genomes]
rs4768853	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4768858	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4768866	0.85[CHB][hapmap]
rs4768884	0.85[EUR][1000 genomes]
rs4768888	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs4768889	0.85[EUR][1000 genomes]
rs4768892	0.85[EUR][1000 genomes]
rs4768893	0.85[EUR][1000 genomes]
rs4768895	0.85[EUR][1000 genomes]
rs4768899	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4768903	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4768904	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4768906	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768907	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4768911	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768912	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4768913	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4768914	0.94[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4768917	0.80[AMR][1000 genomes]
rs4768921	0.80[AMR][1000 genomes]
rs4768922	0.86[CHB][hapmap]
rs4768924	0.81[CHB][hapmap]
rs4768925	0.81[CHB][hapmap]
rs55680342	0.84[EUR][1000 genomes]
rs55877451	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61926275	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580761	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs7134976	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7138604	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs7305375	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7307419	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73094900	0.80[AMR][1000 genomes]
rs73096846	0.80[AMR][1000 genomes]
rs7316864	0.86[CEU][hapmap]
rs7956591	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs876078	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs876079	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs876080	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs952318	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9788159	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
2	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
3	chr12:51022000-51065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:51022600-51064600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr12:51028400-51092400	Weak transcription	Gastric	stomach
7	chr12:51030800-51064800	Weak transcription	Spleen	Spleen
8	chr12:51030800-51065000	Weak transcription	Left Ventricle	heart
9	chr12:51031400-51064800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr12:51031800-51068200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr12:51032200-51065000	Weak transcription	Fetal Lung	lung
12	chr12:51032200-51069000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:51035600-51064600	Weak transcription	Lung	lung
14	chr12:51036000-51068200	Weak transcription	Thymus	Thymus
15	chr12:51036200-51068200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr12:51036800-51070000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr12:51038000-51064800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:51041200-51067200	Weak transcription	Fetal Stomach	stomach
19	chr12:51041400-51065000	Weak transcription	K562	blood
20	chr12:51041400-51068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:51041800-51066200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
23	chr12:51044000-51070800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr12:51045600-51067200	Weak transcription	HUVEC	blood vessel
25	chr12:51049000-51065000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr12:51049800-51065000	Weak transcription	HMEC	breast
28	chr12:51051200-51068200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr12:51051600-51070400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:51051800-51068400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr12:51052200-51071600	Weak transcription	Osteobl	bone
32	chr12:51052400-51068800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr12:51052600-51062400	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr12:51052800-51065200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
36	chr12:51053200-51070000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr12:51053600-51065000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr12:51054400-51063600	Weak transcription	Adipose Nuclei	Adipose
41	chr12:51054600-51064800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr12:51054600-51065200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr12:51054600-51071600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr12:51055400-51065000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr12:51055600-51063800	Weak transcription	Fetal Muscle Leg	muscle
46	chr12:51055600-51064600	Weak transcription	Dnd41	blood
47	chr12:51055800-51063600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr12:51055800-51064800	Weak transcription	Aorta	Aorta
49	chr12:51056000-51063600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr12:51056200-51063200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links