Variant report

Variant	rs12816246
Chromosome Location	chr12:33261528-33261529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12815360	1.00[EUR][1000 genomes]
rs12830962	0.90[EUR][1000 genomes]
rs16920618	0.86[AFR][1000 genomes]
rs34166270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34390674	0.90[EUR][1000 genomes]
rs34506464	0.81[EUR][1000 genomes]
rs34777911	1.00[EUR][1000 genomes]
rs35144121	0.90[EUR][1000 genomes]
rs35151039	1.00[EUR][1000 genomes]
rs35472257	0.85[EUR][1000 genomes]
rs35653702	0.85[EUR][1000 genomes]
rs35846513	0.90[EUR][1000 genomes]
rs35895521	0.81[EUR][1000 genomes]
rs36042953	0.81[EUR][1000 genomes]
rs71457691	1.00[EUR][1000 genomes]
rs71457692	1.00[EUR][1000 genomes]
rs71457696	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1044931	chr12:33179957-33307362	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1046565	chr12:33252166-33294648	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33260800-33261600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
2	chr12:33260800-33261600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
3	chr12:33261000-33261800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr12:33261200-33261800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr12:33261400-33264400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr12:33261400-33264600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:33261400-33265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:33261400-33265000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:33261400-33265200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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