Variant report

Variant	rs12818389
Chromosome Location	chr12:26437212-26437213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11610648	0.94[EUR][1000 genomes]
rs34122204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35069010	0.94[EUR][1000 genomes]
rs36032525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61914492	0.94[EUR][1000 genomes]
rs61914512	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61914514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956017	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26424800-26447000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr12:26429000-26440600	Weak transcription	Right Atrium	heart
3	chr12:26430000-26437400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:26430200-26438400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:26432400-26438200	Weak transcription	Brain Hippocampus Middle	brain
6	chr12:26433000-26440600	Weak transcription	Spleen	Spleen
7	chr12:26433600-26440600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr12:26434600-26438400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:26434600-26439600	Weak transcription	Osteobl	bone
10	chr12:26434800-26439600	Weak transcription	HSMMtube	muscle
11	chr12:26434800-26439800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:26435200-26439200	Weak transcription	Adipose Nuclei	Adipose
13	chr12:26435400-26437600	Enhancers	Primary T cells from cord blood	blood
14	chr12:26435400-26439600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr12:26436400-26439600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:26436800-26439600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:26437000-26439800	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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