Variant report

Variant	rs12822914
Chromosome Location	chr12:117966145-117966146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4767555	0.80[ASN][1000 genomes]
rs7954678	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117940200-117978600	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117953000-117995600	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117957000-117995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:117963000-117977400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:117963600-117968400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr12:117963600-117979200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr12:117964800-117966200	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:117964800-117966400	Enhancers	Fetal Heart	heart
9	chr12:117965000-117966400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr12:117965200-117995800	Weak transcription	Pancreas	Pancrea
11	chr12:117965400-117966400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr12:117965400-117966600	Enhancers	Psoas Muscle	Psoas
13	chr12:117965800-117966200	Weak transcription	Fetal Brain Female	brain
14	chr12:117966000-117966600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:117966000-117966800	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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