Variant report

Variant	rs12825266
Chromosome Location	chr12:67774796-67774797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12815705	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12824549	1.00[AMR][1000 genomes]
rs12833866	1.00[AMR][1000 genomes]
rs56320762	1.00[AMR][1000 genomes]
rs61919016	1.00[AMR][1000 genomes]
rs61919041	1.00[AMR][1000 genomes]
rs67547277	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67739703	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67752507	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73128747	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67762000-67780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:67771600-67775200	Weak transcription	HSMMtube	muscle
3	chr12:67771600-67782400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:67771800-67775600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:67774600-67775000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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